Progress Report / Log

ln -s ../.files .files

cat ../design.lcon | awk '{ print  }' > design.lcon
/usr/local/fsl/bin/flameo --cope=filtered_func_data --vc=var_filtered_func_data  --mask=mask --ld=stats --dm=design.mat --cs=design.grp --tc=design.con  --runmode=ols
Log directory is: stats
Setting up:
ntptsing=12.000000 

evs_group=1.000000 
1.000000 
1.000000 
1.000000 
1.000000 
1.000000 
1.000000 

No f contrasts
nevs=7
ntpts=12
ngs=1
nvoxels=196399
Running:
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Saving results

Log directory was: stats

/bin/rm -f stats/zem* stats/zols* stats/mask* ; /bin/mv dof stats

/usr/local/fsl/bin/smoothest -d 5 -m mask -r stats/res4d > stats/smoothness

/usr/local/fsl/bin/fslmaths stats/zstat1 -mas mask thresh_zstat1

echo 196399 > thresh_zstat1.vol
zstat1: DLH=0.0863713 VOLUME=196399 RESELS=58.7965

/usr/local/fsl/bin/fslmaths stats/zstat2 -mas mask thresh_zstat2

echo 196399 > thresh_zstat2.vol
zstat2: DLH=0.0863713 VOLUME=196399 RESELS=58.7965

/usr/local/fsl/bin/cluster -i thresh_zstat1 -c stats/cope1 -t 2.3 -p 0.05 -d 0.0863713 --volume=196399 --othresh=thresh_zstat1 -o cluster_mask_zstat1 --connectivity=26 --mm --olmax=lmax_zstat1_std.txt > cluster_zstat1_std.txt

/usr/local/fsl/bin/cluster2html . cluster_zstat1 -std

/usr/local/fsl/bin/cluster -i thresh_zstat2 -c stats/cope2 -t 2.3 -p 0.05 -d 0.0863713 --volume=196399 --othresh=thresh_zstat2 -o cluster_mask_zstat2 --connectivity=26 --mm --olmax=lmax_zstat2_std.txt > cluster_zstat2_std.txt

/usr/local/fsl/bin/cluster2html . cluster_zstat2 -std

/usr/local/fsl/bin/fslstats thresh_zstat1 -l 0.0001 -R 2>/dev/null
2.300025 4.959020 

/usr/local/fsl/bin/fslstats thresh_zstat2 -l 0.0001 -R 2>/dev/null
0.000000 0.000000 
Rendering using zmin=2.300025 zmax=4.959020

/usr/local/fsl/bin/overlay 1 0 example_func -a thresh_zstat1 2.300025 4.959020 rendered_thresh_zstat1

/usr/local/fsl/bin/slicer rendered_thresh_zstat1 -S 2 750 rendered_thresh_zstat1.png

/bin/cp /usr/local/fsl/etc/luts/ramp.gif .ramp.gif

/usr/local/fsl/bin/overlay 1 0 example_func -a thresh_zstat2 2.300025 4.959020 rendered_thresh_zstat2

/usr/local/fsl/bin/slicer rendered_thresh_zstat2 -S 2 750 rendered_thresh_zstat2.png

mkdir -p tsplot ; /usr/local/fsl/bin/tsplot . -f filtered_func_data -o tsplot