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The UCLA Advanced Neuroimaging Summer program

Classes meet at the UCLA Faculty Center, 480 Charles E. Young Dr. East, Los Angeles, CA, 90095

Each year we are pleased to be able to offer a two week intensive summer program on advanced topics in neuroimaging. The purpose of this course is to provide a solid foundation in state-of-the-art functional neuroimaging methods. The course covers all aspects of MRI-based neuroimaging data acquisition, experimental design, and data analysis. In addition, students will interact closely with these lecturers in hands-on laboratory exercises and data analysis projects.

This is a particularly exciting year, as it takes place during the 20th anniversary of the invention of functional MRI. Thematically, therefore, we will indulge in a little story telling, but mostly be considering the advancements that could define the second 20 years, especially in the areas of data acquisition and analysis

Our program is targeted to investigators with significant experience in neuroimaging who are eager to gain more tools and knowledge to apply to their work. This year we once again will have an extraordinary faculty of internationally known experts.

YOUR EVALUATIONS ARE EXTREMELY IMPORTANT TO US. Our ability to continue this program at all may depend on them (read more).

Even if you are looking at us online, we are very interested in your feedback and evaluations.Please take a moment to fill in the form at <this link.>

We archive our webcasts at Livestream.com. The (Video) for any lecture links to a recorded video. You can see the archived 2011 summer program at our video on demand web page.

Thanks to the generosity of the National Institutes of Health under grant numbers T90 DA022768 and R90 DA023432 we are able to offer the course without tuition and are able to cover the costs of lodging for students form outside of the LA area. The program is open to applicants worldwide (though we are unable cover costs of travel). We are able to admit about 35 students each year.

The course will feature hands-on laboratory sections in neuroanatomy and image analysis, demonstrations of EEG-fMRI and an opportunity to design experiments and collect data at the UCLA Center for Cognitive Neuroscience imaging laboratory.

Lectures are simulcast on the internet at www.livestream.com/nitpsummercourse. NOTE: The Bandettini and Ogawa special lectures have a separate stream connection, as shown in the schedule below.

Schedule for the Summer 2012 Session 
Please note that topics/titles are subject to changes
  7/9 7/10 7/11 7/12 7/13
8:30 Welcome
Cohen/Bookheimer
Pushing the envelope in MRI
D. Feinberg
Experimental Design I
S. Bookheimer
<slides>
Group Fixed, Mixed, Random effects, Thresholding
M. Monti
<slides>
DTI Theory and Acquisition Basics
M. Cohen
<slides>
Intro MRI physics
D. Ennis
<slides>
9:30 Functional MRI
M. Cohen
<slides>
Neurovascular Coupling
R. Buxton
<slides>
Experimental Design II
M. Monti
<slides>
ROI Analysis, Complex Design Issues
Rissman
<slides>
DTI Analysis
J. Alger
<slides>
10:30 Break
11 MRI Optimization and Limits I
P. Bandettini
<slides>
Quantitative MRI
R. Buxton
<slides>

Experimental Design II
M. Monti
<slides>

MRI Safety
M. Cohen
<slides>
Graph Theory I
J. Brown
<slides>
Ref. noted in lecture
Noon Lunch
1:15 MRI Optimization and Limits II
P. Bandettini
<slides>
Psychophysics
A. Lenartowicz
<slides>
Single Subject Analysis GLM I
M. Monti
<slides>
Artifact Detection with Artdetect
J. Rissman
Graph Theory II
J. Brown
<slides>
2:15

fMRI: the last 20 years
CNSI Auditorium

P. Bandettini
2:30
<slides>
NOTE: Use THIS LINK for the Live Stream

Understanding Artifacts in MRI & fMRI
M. Cohen
<slides>
Single Subject Analysis GLM II
M. Monti
<slides>
Melodic Lab
L. Moore, j. Brown, K. Terashima
<slides>
<LAB SCRIPTS>
<supplemental slides>
<supplemental poster>
Graph Analysis Lab
J. Brown
<LAB SCRIPTS>
<LAB NOTES>
<BCT>
3:15 MRI Pulse Sequence Optimization Lab
Cohen/Feinberg
3:30
<LAB SCRIPTS>
Psychtoolbox I
Lenartowicz/Rodriguez
<LAB SCRIPTS>
FSL I
J. Bramen
<LAB SCRIPTS>
FSL II: ROI Anlaysis
J. Bramen
<LAB SCRIPTS>
Group Projects
Group Projects
T2* Atlas
Saturday and Sunday - Run Group-Designed Experiments
  7/16 7/17 7/18 7/19 7/20
8:30 Dynamic Causal Modeling
A. Anderson
<slides>
Non Parametric Methods
M. Lindquist
<slides>
Machine Learning II
J. Rissman
<slides>
Real-Time fMRI
S. Posse
<slides>
Neuroimaging Career Panel
9:30 ENIGMA
P. Thompson
<slides>
Bayesian Inference
M. Lindquist
<slides>
Group ICA Intro
V. Calhoun
<slides>
Cross Site Image Acquisition
G. Glover
<slides>
Purple Group
Green Group
10:30 Break  
11 Unraveling Brain Pathways
V. Wedeen
<slides>
Looking Backwards and Also Forward with fMRI
CNSI Auditorium
S. Ogawa
<slides>
Multivariate Methods for Fusing Multimodal Imaging and Genetic Data
V. Calhoun
<slides>
Morphometric Analysis
F. Kurth
<slides>
Blue Groupmsochen
Red Group
Noon Lunch  
1:15 Not so tangled: The geometric structure of the brain.
V. Wedeen
<slides>
Machine Learning I
J. Rissman
<slides>
Compressed Sensing
M. Lustig
<slides>
Resting State Connectivity
M. Greicius
<slides>
Pink Group
Orange Group
2:15 TrackVis Lab
V. Wedeen
<LAB SCRIPTS>
<TrackVis/Diffusion Toolkit>
Machine Learning Lab
P. Douglas
<LAB SCRIPTS>
<LAB SCRIPTS 2>
<WEKA>
<slides>
ICA with GIFT
V. Calhoun
<GIFT & Sample Data> <Extra Sample Data>

Beta Series and PPI
J. Rissman
<slides>
Beta Series Demo

Yellow Group
Group Discussion
3:15 Group Projects Group Projects ICA with GIFT Lab
V. Calhoun
PPI Lab
L. Moore, J. Brown, A. Lenartowicz
<Lab Scripts>
 
Farewell

SOME QUESTIONS and ANSWERS about the summer program.
This page is updated frequently, so you may wish to refer to it from time to time.

Updated July 6, 2012

A few questions that came up during the course:
Can you recommend a good brain atlas?
Dr. Bookheimer recommends the Duvernoy, Mai and, of course, Talairach & Tournoux atlases.

Mark likes a variety of digital atlases including those included in fslview and in afni, as well as the convenient iPad atlases: 3DBrain and BrainView and, for $1.99, BrainTutor HD.
groupPhoto
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The UCLA Neuroimaging Training Program is funded by generous awards from the National Institutes of Health, grant numbers R90 DA022768 and T90 DA023422