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The UCLA Advanced Neuroimaging Summer program

Classes meet at the UCLA Faculty Center, 480 Charles E. Young Dr. East, Los Angeles, CA, 90095

Each year we are pleased to be able to offer a two week intensive summer program on advanced topics in neuroimaging. The purpose of this course is to provide a solid foundation in state-of-the-art functional neuroimaging methods. The course covers all aspects of MRI-based neuroimaging data acquisition, experimental design, and data analysis. In addition, students will interact closely with these lecturers in hands-on laboratory exercises and data analysis projects.

Our 2011 Fifth Annual Summer Program will run from July 11 through July 22 and will be held on the UCLA campus. The course is presented as a mixture of classroom didactics and practical lab experience and is highly interactive. This year we are considering the issues of connectivity analyses and machine learning..

Our program is targeted to investigators with significant experience in neuroimaging who are eager to gain more tools and knowledge to apply to their work. This year we once again will have an extraordinary faculty of internationally known experts.

YOUR EVALUATIONS ARE EXTREMELY IMPORTANT TO US. Our ability to continue this program at all may depend on them (read more).

Even if you are looking at us online, we are very interested in your feedback and evaluations.Please take a moment to fill in the form at <this link.>

We archive our webcasts at Livestream.com. The (Video) for any lecture links to a recorded video. You will the archived 2011 summer program at our video on demand web page. Please note that at this writing (July 23, 2011) the on demand library is somewhat incomplete. We will be improving the content in post-production over the next weeks.

Thanks to the generosity of the National Institutes of Health under grant numbers T90 DA022768 and R90 DA023432 we are able to offer the course without tuition and are able to cover the costs of lodging for students form outside of the LA area. The program is open to applicants worldwide (though we are unable cover costs of travel). We are able to admit about 35 students each year.

The course will feature hands-on laboratory sections in neuroanatomy and image analysis, demonstrations of EEG-fMRI and an opportunity to design experiments and collect data at the UCLA Center for Cognitive Neuroscience imaging laboratory.

As in prior years, the lectures will be simulcast on the internet.

Schedule for the Summer 2011 Session - Please note that topics/titles will likely change
  7/11 (Video) 7/12 (Video) 7/13 (Video) 7/14 (Video) 7/15 (Video)
8:30

Intro and Overview
Cohen, Bookheimer

Psychophysics for fMRI
Lenartowicz
<Slides>

Resting State and Population Studies
Greicius
<slides>

fMRI data group analysis
Mumford
Slides

Principles and Pitfalls of Machine Learning
Müller
<slides>

9:30

MRI acquisition I (Video)
Cohen
<Slides>

Expermimenal design I
Bookheimer
<Slides>

Resting State ICA and Advanced Analytic Methods
Greicius
<slides>
Setting up Models for fMRI

<slides>

BCI, fMRI and tkCCA
Müller

Suggested Readings

10:30 Break
11:00 MRI acquisition II
Cohen

Exp design II
Monti & Bookheimer
Slides

fMRI Single Subject Analysis I
Monti
Slides

Setting up Models for fMRI (workshop)
Mumford
<slides>
Non-parametric Imaging Statistics
Lindquist
<slides>
Noon Lunch
1:15

Hemodynamics and fMRI Signals
Buxton
<slides>

fMRI artifacts/quality control
Cohen
<slides>

fMRI Single Subject Analysis II
Monti
Multiple comparisons
Lindquist
<slides>
Bayesian Statistics
Lindquist
<slides>
2:15 Relating neurophysiology and imaging signals
Buxton
<slides>
fMRI preprocessing
Monti
<slides>
FSL Refresher/Advanced - Bramen, Brown, Karlsgodt

Group breakouts - finalize study design

ROI PDF
ROI Zip
T2* Atlas
Safety issues in neuroimaging
Cohen
<slides>

Functional Connectivity
Rissman
<slides>

3:30

Psychtoolbox I - Lenartowicz
MATLAB Exercises
PsychToolBox Download
Part 2 PTB Tutorial Intructions

Psychtoolbox II- Lenartowicz
Group Project Development

Functional Connectivity Lab
Rissman
Brown
Beta Series Demo
PPI Fsl PDF
PPI Lab

Saturday and Sunday - Run Group-Designed Experiments at 3 Tesla
  7/18 (Video) 7/19 (Video) 7/20 (Video) 7/21 (Video) 7/22 (NOT On VIDEO)
8:30

Reporting Whole Brain Data; Pipeline
Van Horn
<slides>

Psychopathogy and Imaging Genetics
Cannon
<slides>

Diffusion Spectrum Imaging I
Wedeen
<slides>

ICA for Discovery and Inference Testing I
Beckmann
<slides>

Becoming a PI: A panel discussion

9:30 Imaging-genetics
Glahn
<slides>
Real-time fMRI
LaConte
<slides>
Diffusion Spectrum Imaging II
Wedeen
ICA for Discovery and Inference Testing II
Beckmann

Green Group Presentation
9:30-10:15

10:30 Break

Red Group Presentation
10:20-11:05

11:00 Machine Learning
Pereira
<slides>
Group ICA of FMRI: Introduction and Review of Current Work
Calhoun
<slides>
Network Analysis I
Bassett
<slides>

New Methods of Connectiviy Analysis
Laurienti
<slides>

Blue Group Presentation
11:10-11:55
Noon Lunch
1:15 Machine learning for Abstract Feature Detection
Pereira
<slides>
Multivariate Methods for Fusion of Multimodal Imaging and Genetic Data
Calhoun
<slides>
Network Analysis II
Bassett

Network Dynamics using EEG and MEG
Greg Simpson
<slides>

Pink Group Presentation
13:00-13:45
2:15 Machine Learning Lab - Pereira, Douglas
Lab Data 1
Lab Data 2
Weka Website
ICA with GIFT
Calhoun
Auditory
Resting
Visuomotor
High Resolution Tractography: Diffusion Toolkit
Wedeen
Diffusion Data
Diffusion PDF
Mask Data

Group ICA Lab
Christian Beckmann


Patch Data

Purple Group Presentation
13:50-14:35


Yellow Group Presentation
14:40-15:25
3:30 Machine Learning Lab - Pereira, Douglas
ICA with GIFT
Calhoun
High Resolution Tractography: TrackVis
Wedeen
Group Project Analyses
Orange Group Presentation
15:30-16:15

Faculty (those indicated by * are offering lab experiences

APPLICATION INFORMATION

If you are interested in applying to the UCLA Advanced Neuroimaging Summer Program for 2012, we will be announcing the dates and process in the first quarter of 2012 at http://www.brainmapping.org/Summer2012.php (<- This link is not yet active)

SOME QUESTIONS and ANSWERS about the summer program. This page is updated frequently, so you may wish to refer to it from time to time.

updated July 21, 2011

A few questions that came up during the course:
Can you recommend a good brain atlas?
Dr. Bookheimer recommends the Duvernoy, Mai and, of course, Talairach & Tournoux atlases.
Mark likes a variety of digital atlases including those included in fslview and in afni, as well as the convenient iPad atlases: 3DBrain and BrainView and, for $1.99, BrainTutor HD.
groupPhoto
  Brainmapping.org home       UCLA Home

The UCLA Neuroimaging Training Program is funded by generous awards from the National Institutes of Health, grant numbers R90 DA022768 and T90 DA023422